Rui Chen, Ph.D.
Li, Y, Wang, H, Peng, J, Gibbs, RA, Lewis, RA, Lupski, JR, Mardon, G, Chen, R. Mutation Survey of Known LCA Genes and Loci in the Saudi Arabian Population. Invest. Ophthalmol. Vis. Sci. 2008 Oct 20; . [PubMed]
Srivatsan, A, Han, Y, Peng, J, Tehranchi, AK, Gibbs, R, Wang, JD, Chen, R. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet. 2008; 4(8):e1000139. [PubMed]
Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs, RA, Rogers, J, Katze, MG, Bumgarner, R, Weinstock, GM, Mardis, ER, Remington, KA, Strausberg, RL et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science 2007 Apr 13; 316(5822):222-34. [PubMed]
Muzny, DM, Scherer, SE, Kaul, R, Wang, J, Yu, J, Sudbrak, R, Buhay, CJ, Chen, R, Cree, A et al. The DNA sequence, annotation and analysis of human chromosome 3. Nature 2006 Apr 27; 440(7088):1194-8. [PubMed]
Ostrin, EJ, Li, Y, Hoffman, K, Liu, J, Wang, K, Zhang, L, Mardon, G, Chen, R. Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless. Genome Res. 2006 Apr; 16(4):466-76. [PubMed]
Scherer, SE, Muzny, DM, Buhay, CJ, Chen, R, Cree, A, Ding, Y, Dugan-Rocha, S, Gill, R, Gunaratne, P et al. The finished DNA sequence of human chromosome 12. Nature 2006 Mar 16; 440(7082):346-51. [PubMed]
Chen, R, Mardon, G. Keeping an eye on the fly genome. Dev. Biol. 2005 Jun 15; 282(2):285-93. [PubMed]
Pappu, KS, Ostrin, EJ, Middlebrooks, BW, Sili, BT, Chen, R, Atkins, MR, Gibbs, R, Mardon, G. Dual regulation and redundant function of two eye-specific enhancers of the Drosophila retinal determination gene dachshund. Development 2005 Jun; 132(12):2895-905. [PubMed]
Ross, MT, Grafham, DV, Coffey, AJ, Scherer, S, McLay, K, Muzny, D, Platzer, M, Howell, GR, Burrows, C et al. The DNA sequence of the human X chromosome. Nature 2005 Mar 17; 434(7031):325-37. [PubMed]
Richards, S, Liu, Y, Bettencourt, BR, Hradecky, P, Letovsky, S, Nielsen, R, Thornton, K, Hubisz, MJ, Chen, R et al. Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. Genome Res. 2005 Jan; 15(1):1-18. [PubMed]
Chen, R, Sodergren, E, Weinstock, GM, Gibbs, RA. Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project. Genome Res. 2004 Apr; 14(4):679-84. [PubMed]
Havlak, P, Chen, R, Durbin, KJ, Egan, A, Ren, Y, Song, XZ, Weinstock, GM, Gibbs, RA. The Atlas genome assembly system. Genome Res. 2004 Apr; 14(4):721-32. [PubMed]
Gibbs, RA, Weinstock, GM, Metzker, ML, Muzny, DM, Sodergren, EJ, Scherer, S, Scott, G, Steffen, D, Worley, KC et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 2004 Apr 1; 428(6982):493-521. [PubMed]
Pappu, KS, Chen, R, Middlebrooks, BW, Woo, C, Heberlein, U, Mardon, G. Mechanism of hedgehog signaling during Drosophila eye development. Development 2003 Jul; 130(13):3053-62. [PubMed]
Chen, R, Bouck, JB, Weinstock, GM, Gibbs, RA. Comparing vertebrate whole-genome shotgun reads to the human genome. Genome Res. 2001 Nov; 11(11):1807-16. [PubMed]
Cai, WW, Chen, R, Gibbs, RA, Bradley, A. A clone-array pooled shotgun strategy for sequencing large genomes. Genome Res. 2001 Oct; 11(10):1619-23. [PubMed]