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HGSC Publications

Aleksandar Milosavljevic, Ph.D.

Hampton, OA, Den Hollander, P, Miller, CA, Delgado, DA, Li, J, Coarfa, C, Harris, RA, Richards, S, Scherer, SE et al. A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome. Genome Res. 2008 Dec 3; . [PubMed]

Coarfa, C, Milosavljevic, A. Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2008; 102-13. [PubMed]

Harris, RA, Rogers, J, Milosavljevic, A. Human-specific changes of genome structure detected by genomic triangulation. Science 2007 Apr 13; 316(5822):235-7. [PubMed]

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs, RA, Rogers, J, Katze, MG, Bumgarner, R, Weinstock, GM, Mardis, ER, Remington, KA, Strausberg, RL et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science 2007 Apr 13; 316(5822):222-34. [PubMed]

Raveendran, M, Harris, RA, Milosavljevic, A, Johnson, Z, Shelledy, W, Cameron, J, Rogers, J. Designing new microsatellite markers for linkage and population genetic analyses in rhesus macaques and other nonhuman primates. Genomics 2006 Dec; 88(6):706-10. [PubMed]

Sea Urchin Genome Sequencing Consortium, Sodergren, E, Weinstock, GM, Davidson, EH, Cameron, RA, Gibbs, RA, Angerer, RC, Angerer, LM, Arnone, MI et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science 2006 Nov 10; 314(5801):941-52. [PubMed]

Honeybee Genome Sequencing Consortium, Insights into social insects from the genome of the honeybee Apis mellifera. Nature 2006 Oct 26; 443(7114):931-49. [PubMed]

Muzny, DM, Scherer, SE, Kaul, R, Wang, J, Yu, J, Sudbrak, R, Buhay, CJ, Chen, R, Cree, A et al. The DNA sequence, annotation and analysis of human chromosome 3. Nature 2006 Apr 27; 440(7088):1194-8. [PubMed]

Scherer, SE, Muzny, DM, Buhay, CJ, Chen, R, Cree, A, Ding, Y, Dugan-Rocha, S, Gill, R, Gunaratne, P et al. The finished DNA sequence of human chromosome 12. Nature 2006 Mar 16; 440(7082):346-51. [PubMed]

Csuros, M, Li, B, Milosavljevic, A. Clone-array pooled shotgun mapping and sequencing: design and analysis of experiments. Genome informatics. International Conference on Genome Informatics 2003; 14():186-95. [PubMed]

Csuros, M, Milosavljevic, A. Pooled Genomic Indexing (PGI): analysis and design of experiments. J. Comput. Biol. 2004; 11(5):1001-21. [PubMed]

Milosavljevic, A, Harris, RA, Sodergren, EJ, Jackson, AR, Kalafus, KJ, Hodgson, A, Cree, A, Dai, W, Csuros, M et al. Pooled genomic indexing of rhesus macaque. Genome Res. 2005 Feb; 15(2):292-301. [PubMed]

Kalafus, KJ, Jackson, AR, Milosavljevic, A. Pash: efficient genome-scale sequence anchoring by Positional Hashing. Genome Res. 2004 Apr; 14(4):672-8. [PubMed]

Gibbs, RA, Weinstock, GM, Metzker, ML, Muzny, DM, Sodergren, EJ, Scherer, S, Scott, G, Steffen, D, Worley, KC et al. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature 2004 Apr 1; 428(6982):493-521. [PubMed]