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Zhang, Z, Burch, PE, Cooney, AJ, Lanz, RB, Pereira, FA, Wu, J, Gibbs, RA, Weinstock, G, Wheeler, DA. Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome.  Genome Res.  2004 Apr; 14(4):580-90. [PubMed]

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Shah, G, Brugada, R, Gonzalez, O, Czernuszewicz, G, Gibbs, RA, Bachinski, L, Roberts, R. The cloning, genomic organization and tissue expression profile of the human DLG5 gene: Correction.  BMC Genomics  2002 Jun 11; 3(1):14. [PubMed]

Shah, G, Brugada, R, Gonzalez, O, Czernuszewicz, G, Gibbs, RA, Bachinski, L, Roberts, R. The cloning, genomic organization and tissue expression profile of the human DLG5 gene.  BMC Genomics  2002; 3(1):6. [PubMed]

Maheshwari, M, Christian, SL, Liu, C, Badner, JA, Detera-Wadleigh, S, Gershon, ES, Gibbs, RA. Mutation screening of two candidate genes from 13q32 in families affected with Bipolar disorder: human peptide transporter (SLC15A1) and human glypican5 (GPC5).  BMC Genomics  2002 Oct 22; 3(1):30. [PubMed]

McKevitt, M, Patel, K, Smajs, D, Marsh, M, McLoughlin, M, Norris, SJ, Weinstock, GM, Palzkill, T. Systematic cloning of Treponema pallidum open reading frames for protein expression and antigen discovery.  Genome Res.  2003 Jul; 13(7):1665-74. [PubMed]

Hasham, SN, Willing, MC, Guo, DC, Muilenburg, A, He, R, Tran, VT, Scherer, SE, Shete, SS, Milewicz, DM. Mapping a locus for familial thoracic aortic aneurysms and dissections (TAAD2) to 3p24-25.  Circulation  2003 Jul 1; 107(25):3184-90. [PubMed]

Skaletsky, H, Kuroda-Kawaguchi, T, Minx, PJ, Cordum, HS, Hillier, L, Brown, LG, Repping, S, Pyntikova, T, Ali, J et al. The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.  Nature  2003 Jun 19; 423(6942):825-37. [PubMed]

Smajs, D, Smarda, J, Weinstock, GM. The Escherichia fergusonii iucABCD iutA genes are located within a larger chromosomal region similar to pathogenicity Islands.  Folia Microbiol. (Praha)  2003; 48(2):139-47. [PubMed]

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Sucgang, R, Chen, G, Liu, W, Lindsay, R, Lu, J, Muzny, D, Shaulsky, G, Loomis, W, Gibbs, R et al. Sequence and structure of the extrachromosomal palindrome encoding the ribosomal RNA genes in Dictyostelium.  Nucleic Acids Res.  2003 May 1; 31(9):2361-8. [PubMed]

Hattori, E, Liu, C, Badner, JA, Bonner, TI, Christian, SL, Maheshwari, M, Detera-Wadleigh, SD, Gibbs, RA, Gershon, ES. Polymorphisms at the G72/G30 gene locus, on 13q33, are associated with bipolar disorder in two independent pedigree series.  Am. J. Hum. Genet.  2003 May; 72(5):1131-40. [PubMed]

Nallapareddy, SR, Weinstock, GM, Murray, BE. Clinical isolates of Enterococcus faecium exhibit strain-specific collagen binding mediated by Acm, a new member of the MSCRAMM family.  Mol. Microbiol.  2003 Mar; 47(6):1733-47. [PubMed]

Gibbs, RA, Nelson, DL. Human genetics. Primate shadow play.  Science  2003 Feb 28; 299(5611):1331-3. [PubMed]

Heilig, R, Eckenberg, R, Petit, JL, Fonknechten, N, Da Silva, C, Cattolico, L, Levy, M, Barbe, V, de Berardinis, V et al. The DNA sequence and analysis of human chromosome 14.  Nature  2003 Feb 6; 421(6923):601-7. [PubMed]

Celniker, SE, Wheeler, DA, Kronmiller, B, Carlson, JW, Halpern, A, Patel, S, Adams, M, Champe, M, Dugan, SP et al. Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.  Genome Biol.  2002; 3(12):RESEARCH0079. [PubMed]

Strausberg, RL, Feingold, EA, Grouse, LH, Derge, JG, Klausner, RD, Collins, FS, Wagner, L, Shenmen, CM, Schuler, GD et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.  Proc. Natl. Acad. Sci. U.S.A.  2002 Dec 24; 99(26):16899-903. [PubMed]

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Metzker, ML, Mindell, DP, Liu, XM, Ptak, RG, Gibbs, RA, Hillis, DM. Molecular evidence of HIV-1 transmission in a criminal case.  Proc. Natl. Acad. Sci. U.S.A.  2002 Oct 29; 99(22):14292-7. [PubMed]

Maheshwari, M, Belmont, J, Fernbach, S, Ho, T, Molinari, L, Yakub, I, Yu, F, Combes, A, Towbin, J et al. PTPN11 mutations in Noonan syndrome type I: detection of recurrent mutations in exons 3 and 13.  Hum. Mutat.  2002 Oct; 20(4):298-304. [PubMed]

Sifri, CD, Mylonakis, E, Singh, KV, Qin, X, Garsin, DA, Murray, BE, Ausubel, FM, Calderwood, SB. Virulence effect of Enterococcus faecalis protease genes and the quorum-sensing locus fsr in Caenorhabditis elegans and mice.  Infect. Immun.  2002 Oct; 70(10):5647-50. [PubMed]

Sgourou, A, Papachatzopoulou, A, Psiouri, L, Antoniou, M, Zoumbos, N, Gibbs, R, Athanassiadou, A. The beta-globin C-->G mutation at 6 bp 3' to the termination codon causes beta-thalassaemia by decreasing the mRNA level.  Br. J. Haematol.  2002 Aug; 118(2):671-6. [PubMed]

Mylonakis, E, Engelbert, M, Qin, X, Sifri, CD, Murray, BE, Ausubel, FM, Gilmore, MS, Calderwood, SB. The Enterococcus faecalis fsrB gene, a key component of the fsr quorum-sensing system, is associated with virulence in the rabbit endophthalmitis model.  Infect. Immun.  2002 Aug; 70(8):4678-81. [PubMed]

Scott, GB, Steffen, DL, Edgar, D, Warren, JT, Kovar, CL, Scherer, SE, Havlak, PH, Gibbs, RA. Loader Lite: a new software tool for the ABI PRISM 3700 DNA sequencer.  BioTechniques  2002 Jun; 32(6):1366, 1368, 1370-1. [PubMed]

Wang, LL, Worley, K, Gannavarapu, A, Chintagumpala, MM, Levy, ML, Plon, SE. Intron-size constraint as a mutational mechanism in Rothmund-Thomson syndrome.  Am. J. Hum. Genet.  2002 Jul; 71(1):165-7. [PubMed]

Gingras, MC, Lapillonne, H, Margolin, JF. TREM-1, MDL-1, and DAP12 expression is associated with a mature stage of myeloid development.  Mol. Immunol.  2002 Mar; 38(11):817-24. [PubMed]

Dederich, DA, Okwuonu, G, Garner, T, Denn, A, Sutton, A, Escotto, M, Martindale, A, Delgado, O, Muzny, DM et al. Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes.  Nucleic Acids Res.  2002 Apr 1; 30(7):e32. [PubMed]

Chew, LJ, Yuan, X, Scherer, SE, Qie, L, Huang, F, Hayes, WP, Gallo, V. Characterization of the rat GRIK5 kainate receptor subunit gene promoter and its intragenic regions involved in neural cell specificity.  J. Biol. Chem.  2001 Nov 9; 276(45):42162-71. [PubMed]

Chen, R, Bouck, JB, Weinstock, GM, Gibbs, RA. Comparing vertebrate whole-genome shotgun reads to the human genome.  Genome Res.  2001 Nov; 11(11):1807-16. [PubMed]

Gingras, MC, Lapillonne, H, Margolin, JF. CFFM4: a new member of the CD20/FcepsilonRIbeta family.  Immunogenetics  2001 Aug; 53(6):468-76. [PubMed]

Cai, WW, Chen, R, Gibbs, RA, Bradley, A. A clone-array pooled shotgun strategy for sequencing large genomes.  Genome Res.  2001 Oct; 11(10):1619-23. [PubMed]

Garsin, DA, Sifri, CD, Mylonakis, E, Qin, X, Singh, KV, Murray, BE, Calderwood, SB, Ausubel, FM. A simple model host for identifying Gram-positive virulence factors.  Proc. Natl. Acad. Sci. U.S.A.  2001 Sep 11; 98(19):10892-7. [PubMed]

Katsanis, N, Worley, KC, Lupski, JR. An evaluation of the draft human genome sequence.  Nat. Genet.  2001 Sep; 29(1):88-91. [PubMed]

Yoon, DS, Li, L, Zhang, RD, Kram, A, Ro, JY, Johnston, D, Grossman, HB, Scherer, S, Czerniak, B. Genetic mapping and DNA sequence-based analysis of deleted regions on chromosome 16 involved in progression of bladder cancer from occult preneoplastic conditions to invasive disease.  Oncogene  2001 Aug 16; 20(36):5005-14. [PubMed]

Kram, A, Li, L, Zhang, RD, Yoon, DS, Ro, JY, Johnston, D, Grossman, HB, Scherer, S, Czerniak, B. Mapping and genome sequence analysis of chromosome 5 regions involved in bladder cancer progression.  Lab. Invest.  2001 Jul; 81(7):1039-48. [PubMed]

Qin, X, Singh, KV, Weinstock, GM, Murray, BE. Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF.  J. Bacteriol.  2001 Jun; 183(11):3372-82. [PubMed]

Lander, ES, Linton, LM, Birren, B, Nusbaum, C, Zody, MC, Baldwin, J, Devon, K, Dewar, K, Doyle, M et al. Initial sequencing and analysis of the human genome.  Nature  2001 Feb 15; 409(6822):860-921. [PubMed]

Montgomery, KT, Lee, E, Miller, A, Lau, S, Shim, C, Decker, J, Chiu, D, Emerling, S, Sekhon, M et al. A high-resolution map of human chromosome 12.  Nature  2001 Feb 15; 409(6822):945-6. [PubMed]

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Pacheco, SE, Gibbs, RA, Ansari-Lari, A, Rogers, P. Intranasal immunization with HIV reverse transcriptase: effect of dose in the induction of helper T cell type 1 and 2 immunity.  AIDS Res. Hum. Retroviruses  2000 Dec 10; 16(18):2009-17. [PubMed]

Bouck, J, McLeod, MP, Worley, K, Gibbs, RA. The human transcript database: a catalogue of full length cDNA inserts.  Bioinformatics  2000 Feb; 16(2):176-7. [PubMed]

Nallapareddy, SR, Qin, X, Weinstock, GM, Hook, M, Murray, BE. Enterococcus faecalis adhesin, ace, mediates attachment to extracellular matrix proteins collagen type IV and laminin as well as collagen type I.  Infect. Immun.  2000 Sep; 68(9):5218-24. [PubMed]

Bowles, KR, Abraham, SE, Brugada, R, Zintz, C, Comeaux, J, Sorajja, D, Tsubata, S, Li, H, Brandon, L et al. Construction of a high-resolution physical map of the chromosome 10q22-q23 dilated cardiomyopathy locus and analysis of candidate genes.  Genomics  2000 Jul 15; 67(2):109-27. [PubMed]

Qin, X, Singh, KV, Weinstock, GM, Murray, BE. Effects of Enterococcus faecalis fsr genes on production of gelatinase and a serine protease and virulence.  Infect. Immun.  2000 May; 68(5):2579-86. [PubMed]

Bouck, JB, Metzker, ML, Gibbs, RA. Shotgun sample sequence comparisons between mouse and human genomes.  Nat. Genet.  2000 May; 25(1):31-3. [PubMed]

Schwartz, S, Zhang, Z, Frazer, KA, Smit, A, Riemer, C, Bouck, J, Gibbs, R, Hardison, R, Miller, W. PipMaker--a web server for aligning two genomic DNA sequences.  Genome Res.  2000 Apr; 10(4):577-86. [PubMed]

Zhang, Y, Dipple, KM, Vilain, E, Huang, BL, Finlayson, G, Therrell, BL, Worley, K, Deininger, P, McCabe, ER. AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individual with benign glycerol kinase deficiency.  Hum. Mutat.  2000; 15(4):316-23. [PubMed]

Adams, MD, Celniker, SE, Holt, RA, Evans, CA, Gocayne, JD, Amanatides, PG, Scherer, SE, Li, PW, Hoskins, RA et al. The genome sequence of Drosophila melanogaster.  Science  2000 Mar 24; 287(5461):2185-95. [PubMed]

Hoskins, RA, Nelson, CR, Berman, BP, Laverty, TR, George, RA, Ciesiolka, L, Naeemuddin, M, Arenson, AD, Durbin, J et al. A BAC-based physical map of the major autosomes of Drosophila melanogaster.  Science  2000 Mar 24; 287(5461):2271-4. [PubMed]

Gingras, MC, Margolin, JF. Differential expression of multiple unexpected genes during U937 cell and macrophage differentiation detected by suppressive subtractive hybridization.  Exp. Hematol.  2000 Jan; 28(1):65-76. [PubMed]

Xu, Y, Singh, KV, Qin, X, Murray, BE, Weinstock, GM. Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis.  Infect. Immun.  2000 Feb; 68(2):815-23. [PubMed]