Selected Publications: Harsha Doddapaneni, Ph.D.
Selected Publications: Harsha Doddapaneni, Ph.D.
Harsha Doddapaneni, Ph.D
Loconsole G, Saldarelli P, Doddapaneni H, Savino V, Martelli GP and Saponari M. 2012. Identification of a single-stranded DNA virus associated with Citrus chlorotic dwarf disease, a new member in the family Geminiviridae. Virology. j.virol.2012.06.005. [PubMed]
Hong X, Doddapaneni H, Comeron JM, Rodesch M, Halvensleben H, Nien CY, Fu B, Metpally R, Richmond T, Albert T, Manak JR. 2012. Microarray-based Capture of Novel Expressed Cell type-specific Transcripts (CoNECT) to annotate tissue specific transcript isoforms in D. melanogaster. Genes, Genomes, Genetics (G3) (Bethesda, doi: 10.1534/g3.112.003194).
Fernandez-Fueyo, Ruiz-Dueñas FJ, Ferreira P, et al. 2012. Comparative genomics of Ceriporiopisis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis". Proc Natl Acad Sci USA. 109: 5458-5463. [PubMed]
Price DC, Chan CX, Yoon HS, et al. 2012. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science. 2012. 335:843-847. [PubMed]
Lin H, Lou B*, Glynn MJ*, Doddapaneni H*, Civerolo EL, Chen C, Duan YP, Zhou L, Vahling CM. 2011. The Complete Genome Sequence of ‘Candidatus Liberibacter solanacearum’, the Bacterium Associated with Potato Zebra Chip Disease. PLOS One. e19135. *contributed equally. [PubMed]
Syed K, Doddapaneni H, V. Subramanian, and J. S. Yadav. 2010. Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs). Biochem. Biophys. Res. Commun. 399:492-497. [PubMed]
Lin H, Chen C, Doddapaneni H, Duan Y, Civerolo EL, Bai X, Zhao X. 2010. A New Diagnostic System for Ultra Sensitive and Specific Detection and Quantification of Candidatus Liberibacter asiaticus, the Bacterium Associated with Citrus Huanglongbing. Journal of Microbiological Methods. 81(1):17-25. [PubMed]
V. Subramanian, Doddapaneni H, Syed K, and J. S. Yadav. 2010. P450 Redox Enzymes in the White Rot Fungus Phanerochaete chrysosporium: Gene Transcription, Heterologous Expression, and Activity Analysis on the Purified Proteins. Current Microbiology. [PubMed].
Pomerantz MM, Ahmadiyeh N, Jia L, Herman P, Verzi MP, Doddapaneni H, Beckwith CA, Chan JA, Hills A,Davis M, Yao K, Kehoe SM, Haiman CA, Yan C, Henderson BE, Frenkel B, Barretina J, Bass A, Tabernero J, Baselga J, Regan MM, Manak JR, Shivdasani R, Coetzee GA, Freedman ML. 2009. The 8q24 cancer risk variant rs6983267 demonstrates long range interaction with MYC in colorectal cancer. Nature Genetics. 41: 882-884. [PubMed].
Martinez D, Challacombe J, Morgenstern I et al. 2009. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proc Natl Acad Sci U S A.106:1954-1959. [PubMed].
Complete genome sequence of citrus huanglongbing bacterium, ‘Candidatus Liberibacter asiaticus’ obtained through metagenomicsDuan Y, Zhou L,Hall DG*,Li W*, Doddapaneni H*, Lin H, Liu L, Vahling CM, Gabriel DW, Williams K, Dickerman A, Sun Y and Gottwald T. 2009. Mol Plant Microbe Interact. 22:1011-20. [PubMed]. (Contributed equally).
Doddapaneni H, H. Lin, M.A. Walker Yao J and E.L. Civerolo. 2008. VitisExpDB: A database resource for grape functional genomics. BMC Plant Biology. 8: 23. [PubMed].
Yao J, Hong Lin, Deyne AV, Doddapaneni H, Francis M, EL Civerolo and EGM Lemos. 2008. SCPrimer: Standalone software to design specific and common primers for homologous genomes. BMC Microbiology. 8:185. [PubMed].
H Doddapaneni, H Lin, Zhao X, Bai X and EL Civerolo. 2008. Comparative Genomic Analyses of the 16S-23S rRNA and Other Gene Coding Regions of the Citrus Huanglongbing (HLB)-associated Bacterium Candidatus Liberibacter. BMC Research Notes. 1:72. [PubMed].
Lin H, Doddapaneni H, Bai X, Yao J, Zhao X, Civerolo EL. 2008. Rapid acquisition of uncharacterized sequences from Candidatus Liberibacter, unculturable bacteria, by a new genomic walking method. Mol. Cell Probes. [PubMed].
Yao J, Lin H, Doddapaneni H, and Civerolo EL. 2007. A genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms. In Silico Biology. 7: 0020. [PubMed].
H. Lin*, Doddapaneni H*, Y. Takahashi and M.A. Walker. 2007. Comparative Analysis of ESTs Involved in Grape Responses to Xylella fastidiosa Infection. BMC Plant Biology. 7: 8. (*Equal contribution first authors). [PubMed]
J Yao, B. Hout, T. Robadey, Doddapaneni H and A. Enyedi. 2007. A b-glucosidase gene induces increased salicylic acid level in transgenic plants of Nicotiana tabacum cv. Xanthi-nc NN genotype. Plant Cell Reports. 26:291-301. [PubMed]
J. S. Yadav, Doddapaneni H and V. Subramanian. 2006. P450ome of the white rot fungus Phanerochaete chrysosporium: structure, evolution and regulation of expression of genomic P450 clusters. Biochem. Soc. Trans. 34:1165-11569. [PubMed]
Doddapaneni H, Yao J, Lin H, Walker MA and Civerolo EL. 2006. Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa”. BMC Genomics. 7:225. [PubMed]
Doddapaneni H., and J. S. Yadav. 2005. Microarray-based global differential expression profiling of P450 monooxygenases and regulatory proteins for signal transduction pathways in the white-rot fungus Phanerochaete chrysosporium. Molecular Genetics and Genomics. 274: 454-466. DOI 10.1007/s00438-005-0051-2 [PubMed]
Doddapaneni H and J. S. Yadav. 2005. Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white-rot fungus Phanerochaete chrysosporium: Evidence for gene duplications, and extensive gene clustering. BMC Genomics. Jun 14;6(1):92 [PubMed]
Doddapaneni H, V. Subramanian, and J. S. Yadav. 2005. Physiological regulation, xenobiotic induction and heterologous expression of P450 monooxygenase gene pc-3, a new member of the CYP63 gene cluster in the white rot fungus Phanerochaete chrysosporium. Current Microbiology. 50:292-298.[PubMed]
Doddapaneni H., Yadav J.S. 2004. Differential regulation and xenobiotic induction of tandem P450 monooxygenase genes pc-1 (CYP63A1) and pc-2 (CYP63A2) in the white rot fungus Phanerochaete chrysosporium. Appllied Microbiology and Biotechnology. 65: 559-565. [PubMed]