Selected Publications: Xiang Qin, Ph.D.

Xiang Qin, Ph.D.

Liu, Y, Qin, X, Song, XZ, Jiang, H, Shen, Y, Durbin, KJ, Lien, S, Kent, MP, Sodeland, M et al. Bos taurus genome assembly.  BMC Genomics  2009; 10():180. [PubMed]

Bovine HapMap Consortium, Gibbs, RA, Taylor, JF, Van Tassell, CP, Barendse, W, Eversole, KA, Gill, CA, Green, RD, Hamernik, DL et al. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.  Science  2009 Apr 24; 324(5926):528-32. [PubMed]

Bovine Genome Sequencing and Analysis Consortium, Elsik, CG, Tellam, RL, Worley, KC, Gibbs, RA, Muzny, DM, Weinstock, GM, Adelson, DL, Eichler, EE et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution.  Science  2009 Apr 24; 324(5926):522-8. [PubMed]

Durfee, T, Nelson, R, Baldwin, S, Plunkett, G, Burland, V, Mau, B, Petrosino, JF, Qin, X, Muzny, DM et al. The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse.  J. Bacteriol.  2008 Apr; 190(7):2597-606. [PubMed]

Highlander, SK, Hulten, KG, Qin, X, Jiang, H, Yerrapragada, S, Mason, EO, Shang, Y, Williams, TM, Fortunov, RM et al. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus.  BMC Microbiol.  2007; 7():99. [PubMed]

Aronstein, KA, Murray, KD, de Leon, JH, Qin, X, Weinstock, GM. High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis.  Mycologia  ; 99(4):553-61. [PubMed]

Gioia, J, Yerrapragada, S, Qin, X, Jiang, H, Igboeli, OC, Muzny, D, Dugan-Rocha, S, Ding, Y, Hawes, A et al. Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032.  PLoS ONE  2007; 2(9):e928. [PubMed]

Karpathy, SE, Qin, X, Gioia, J, Jiang, H, Liu, Y, Petrosino, JF, Yerrapragada, S, Fox, GE, Haake, SK et al. Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium.  PLoS ONE  2007; 2(7):e659. [PubMed]

Rhesus Macaque Genome Sequencing and Analysis Consortium, Gibbs, RA, Rogers, J, Katze, MG, Bumgarner, R, Weinstock, GM, Mardis, ER, Remington, KA, Strausberg, RL et al. Evolutionary and biomedical insights from the rhesus macaque genome.  Science  2007 Apr 13; 316(5822):222-34. [PubMed]

Qin, X, Evans, JD, Aronstein, KA, Murray, KD, Weinstock, GM. Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis.  Insect Mol. Biol.  2006 Oct; 15(5):715-8. [PubMed]

Gioia, J, Qin, X, Jiang, H, Clinkenbeard, K, Lo, R, Liu, Y, Fox, GE, Yerrapragada, S, McLeod, MP et al. The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny.  J. Bacteriol.  2006 Oct; 188(20):7257-66. [PubMed]

McLeod, MP, Qin, X, Karpathy, SE, Gioia, J, Highlander, SK, Fox, GE, McNeill, TZ, Jiang, H, Muzny, D et al. Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.  J. Bacteriol.  2004 Sep; 186(17):5842-55. [PubMed]

Sifri, CD, Mylonakis, E, Singh, KV, Qin, X, Garsin, DA, Murray, BE, Ausubel, FM, Calderwood, SB. Virulence effect of Enterococcus faecalis protease genes and the quorum-sensing locus fsr in Caenorhabditis elegans and mice.  Infect. Immun.  2002 Oct; 70(10):5647-50. [PubMed]

Mylonakis, E, Engelbert, M, Qin, X, Sifri, CD, Murray, BE, Ausubel, FM, Gilmore, MS, Calderwood, SB. The Enterococcus faecalis fsrB gene, a key component of the fsr quorum-sensing system, is associated with virulence in the rabbit endophthalmitis model.  Infect. Immun.  2002 Aug; 70(8):4678-81. [PubMed]

Garsin, DA, Sifri, CD, Mylonakis, E, Qin, X, Singh, KV, Murray, BE, Calderwood, SB, Ausubel, FM. A simple model host for identifying Gram-positive virulence factors.  Proc. Natl. Acad. Sci. U.S.A.  2001 Sep 11; 98(19):10892-7. [PubMed]

Qin, X, Singh, KV, Weinstock, GM, Murray, BE. Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF.  J. Bacteriol.  2001 Jun; 183(11):3372-82. [PubMed]

Nallapareddy, SR, Qin, X, Weinstock, GM, Hook, M, Murray, BE. Enterococcus faecalis adhesin, ace, mediates attachment to extracellular matrix proteins collagen type IV and laminin as well as collagen type I.  Infect. Immun.  2000 Sep; 68(9):5218-24. [PubMed]

Qin, X, Singh, KV, Weinstock, GM, Murray, BE. Effects of Enterococcus faecalis fsr genes on production of gelatinase and a serine protease and virulence.  Infect. Immun.  2000 May; 68(5):2579-86. [PubMed]

Xu, Y, Singh, KV, Qin, X, Murray, BE, Weinstock, GM. Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis.  Infect. Immun.  2000 Feb; 68(2):815-23. [PubMed]

Singh, KV, Qin, X, Weinstock, GM, Murray, BE. Generation and testing of mutants of Enterococcus faecalis in a mouse peritonitis model.  J. Infect. Dis.  1998 Nov; 178(5):1416-20. [PubMed]

Qin, X, Singh, KV, Xu, Y, Weinstock, GM, Murray, BE. Effect of disruption of a gene encoding an autolysin of Enterococcus faecalis OG1RF.  Antimicrob. Agents Chemother.  1998 Nov; 42(11):2883-8. [PubMed]