HGSC Software

Atlas Whole Genome Assembly Suite
A suite of software tools for the assembly of large genomes.

Atlas Visualization Tools
Visualization tools in support of large-scale assembly.


Bang.
A fast, easy to use, repeat supressing search tool.


CBT++
A collection of C++ classes to aid the development of computational biology applications.


BCM Trace Viewer
A Java application/applet to display .scf traces and phred quality values.

BCM Java Alignment Viewer
A Java application/applet to view sequence alignment files.


HGSC Apollo Adapter
A custom MySQL/GAMEXML adapter for Apollo Annotation Editor Version 1.3.5


PASH comparison method
An efficient large-scale sequence comparison method that uses positional hashing.




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BCM HGSC