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Marmoset Genome Project

 
        
 


Photo courtesy of Raimond Spekking, Wikimedia Commons

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NCBI Trace Archive

About the project

 

The HGSC is sequencing the genome of the white-tufted-ear Marmoset (Callithrix jacchus). The marmoset is a New World Monkey, estimated to have diverged from the anthropoid common ancestor 35 to 40 million years ago. The marmoset is a model for the study of drug sensitivity, brain function, immunity and autoimmune disease.

The Marmoset Genome Sequencing Consortium is a collaboration between the Baylor College of Medicine Human Genome Sequencing Center and the Genome Sequencing Center at Washington University, St. Louis. The goal of the project is to produce a seven-fold WGS shotgun assembly, using small insert plasmids as well as large insert clone ends from BACs and Fosmids. There will be finishing and BAC sequencing components of the project to investigate interesting regions for human diseases and to highlight primate evolution.

The sequencing and comparative analysis is funded by the National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH).

Access to the data

 

Use the BAC Fisher to find Whole Genome Shotgun reads that overlap sequencing reads from a genomic clone or an expressed sequence. BAC-Fisher is tuned to reject repeat matches without masking repeats in the query.

Resources

 

Callithrix jacchus White Paper

Primate BAC Library Resource Proposal

BAC resources - Children's Hospital Oakland Research Institute

Taxonomy browser summary of data at NCBI

International Genome Consortium Database

Conditions for use

 
         

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BCM HGSC