Atlas Whole Genome Assembly Suite
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A suite of software tools for the assembly of large genomes. |
Atlas Visualization Tools
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Visualization tools in support of large-scale assembly. MegaDot - A large-scale dot plotter bcm-ace-plots - A tool to display contig template coverage, read coverage, quality, and high quality discrepencies atlas-readpainter - A multiple alignment to reference tool |
bang
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A fast, easy to use, repeat supressing search tool. |
CBT++
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A collection of C++ classes to aid the development of computational biology applications. |
BCM Trace Viewer
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A Java application/applet to display .scf traces and phred quality values. |
BCM Java Alignment Viewer
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A Java application/applet to view sequence alignment files. |
PASH comparison method
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An efficient large-scale sequence comparison method that uses positional hashing. |
SimPed
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SimPed quickly generates haplotype and/or genotype data for pedigrees. |